species:   Cocin
pid:       PID1280
parent:    cci-milR-25
paralog:   
locus:     scaffold_33:109333-109394
matures:   ['UGGCUUGGGGAGGAGAGC', 'CUCGCUGAACCAGGUCAUG']
srr:       SRR9972088
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972088.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972088.cram scaffold_33:109333-109394

0 out of bounds
0 alignments
0 proper strand
0 stranded perfect matches

******************                      ********************* 
UGGCUUGGGGAGGAGAGCUGUCUGGCUUUGGCUUGAAGACGCCUCGCUGAACCAGGUCAUGC
((((((((..(((((.((.(((((((....)))...))))))))).))...))))))))...
UGGCUUGGGGAGGAGAGC-------------------------------------------- l=18 a=0 c
------------------------------------------CUCGCUGAACCAGGUCAUG- l=19 a=0 c*
UGGCUUGGGGAGGAGAGC-------------------------------------------- l=18 a=0 ma
------------------------------------------CUCGCUGAACCAGGUCAUG- l=19 a=0 ma*


No alignments to locus

mb-01011
ax-1011001
ku-01
ss-000010011100
fn-001
